Basic Information

Panacea App/ MS suite / results for "Greece_1_IonXpress_026_DADC06277_TSVC.vcf"

  • Job Title : 19Jan2022_06_04_05#AUA20523
  • Program : Chronos WebServer
  • Database : Panacea Application MS Database
  • Molecule Type : STRING | VCF FILE
  • Input Data : 37023
  • Accepted Input Data : 35759
  • Rejected Input Data : 1264
  • Identified SNPs : 30
  • Date of Analysis : 19Jan2022

SNPs Analysis Results for MS

Strong-associated SNPs

High-associated SNPs

Associated SNPs


SNPChromosomePositionRefGenomeMutationsGeneVariantTypeDiseaseLitVarClass
rs1061622 chr1 12192898 (GRCh38.p12) T>G TNFRSF1B Initiator Codon Variant Arthritis_Rheumatoid=41
Neoplasms=38
Carcinoma_Non_Small_CellLung=27
DepressiveDisorder=27
LupusErythematosus_Systemic=25		 rs1061622 C
rs2476601 chr1 113834946 (GRCh38.p12) A>G / A>T PTPN22 Missense Variant||AP4B1-AS1|Intron Variant Arthritis_Rheumatoid=914
AutoimmuneDiseases=646
LupusErythematosus_Systemic=617
DiabetesMellitus=366
DiabetesMellitus_Type1=175		 rs2476601 C
rs926103 chr1 156815190 (GRCh38.p12) T>A / T>C SH2D2A Missense Variant||NTRK1|2KB Upstream Variant OvarianNeoplasms=9
OvarianDiseases=3
MultipleSclerosis=2
BreastNeoplasms=2
Neoplasms=2		 rs926103 B
rs945635 chr1 157700500 (GRCh38.p12) C>A / C>G / C>T FCRL3 Non Coding Transcript Variant NeuromyelitisOptica=5
Arthritis_Rheumatoid=4
LupusErythematosus_Systemic=4
AutoimmuneDiseases=3
Pancreatitis=1		 rs945635 C
rs315952 chr2 113132727 (GRCh38.p12) T>A / T>C IL1RN Missense Variant Obesity=15
Hypertension=9
LupusErythematosus_Systemic=8
Spondylitis_Ankylosing=4
RespiratoryDistressSyndrome_Adult=4		 C
rs3747517 chr2 162272314 (GRCh38.p12) T>C IFIH1 Missense Variant LupusErythematosus_Systemic=18
HepatitisC=12
DiabetesMellitus=9
Candidemia=4
AutoimmuneDiseases=4		 C
rs7041 chr4 71752617 (GRCh38.p12) A>C / A>T GC Missense Variant Neoplasms=65
BreastNeoplasms=58
Asthma=56
ProstaticNeoplasms=48
ColorectalNeoplasms=40		 C
rs1494558 chr5 35860966 (GRCh38.p12) T>A / T>C IL7R Missense Variant||LOC105374724|2KB Upstream Variant GraftVsHostDisease=3
NeurodegenerativeDiseases=2
GlutaricAcidemiaI=2
Erythema=2
HereditaryBundleBranchSystemDefect=2		 C
rs1494555 chr5 35871088 (GRCh38.p12) G>A IL7R Missense Variant Asthma=21
GraftVsHostDisease=7
DrugHypersensitivity=6
LungNeoplasms=5
Lymphoma_Follicular=3		 C
rs3194051 chr5 35876172 (GRCh38.p12) A>G IL7R Missense Variant Coinfection=9
MultipleSclerosis=7
LiverDiseases=6
LiverCirrhosis=5
Fibrosis=4		 rs3194051 A
rs30187 chr5 96788627 (GRCh38.p12) T>A / T>C ERAP1 Missense Variant Spondylitis_Ankylosing=38
Psoriasis=31
BehcetSyndrome=29
MultipleSclerosis=23
Hypertension=16		 rs30187 A
rs2857766 chr6 29666226 (GRCh38.p12) G>C MOG Missense Variant Obsessive_CompulsiveDisorder=7
MultipleSclerosis=4
AutisticDisorder=2
Psychoses_Substance_Induced=2
ChromosomeAberrations=1		 rs2857766 B
rs3130253 chr6 29666235 (GRCh38.p12) A>G / A>T MOG Missense Variant C
rs1476679 chr7 100406823 (GRCh38.p12) C>A / C>T ZCWPW1 Intron Variant MultipleAcylCoenzymeADehydrogenaseDeficiency=68
AlzheimerDisease=40
VanDerWoudeSyndrome=38
BrainInfarction=7
MemoryDisorders=3		 C
rs1799983 chr7 150999023 (GRCh38.p12) T>A / T>G NOS3 Missense Variant Hypertension=506
CoronaryArteryDisease=285
MyocardialInfarction=197
DiabetesMellitus=161
CerebralInfarction=95		 C
rs885822 chr10 70598821 (GRCh38.p12) G>A / G>C / G>T PRF1 Missense Variant Lymphohistiocytosis_Hemophagocytic=2
Anemia_Aplastic=2
HIVInfections=1
MultipleSclerosis=1
Charcot_Marie_ToothDisease_Type1D=1		 rs885822 C
rs2234978 chr10 89012072 (GRCh38.p12) T>A / T>C FAS Synonymous Variant Carcinoma_Non_Small_CellLung=6
Nausea=4
OpitzGBBBSyndrome_X_Linked=2
Leukemia_Myelogenous_Chronic_BCR_ABLPositive=1
Reflex_Abnormal=1		 C
rs1695 chr11 67585218 (GRCh38.p12) A>G GSTP1 Missense Variant BreastNeoplasms=221
Neoplasms=213
ProstaticNeoplasms=136
ColorectalNeoplasms=120
Asthma=111		 C
rs2228570 chr12 47879112 (GRCh38.p12) A>C / A>G / A>T VDR Initiator Codon Variant OvarianNeoplasms=59
Asthma=56
BreastNeoplasms=40
Neoplasms=36
MultipleSclerosis=33		 rs2228570 A
rs2066842 chr16 50710713 (GRCh38.p12) C>A / C>T NOD2 Missense Variant ParkinsonDisease=26
CrohnDisease=21
Neoplasms=21
Uveitis=11
Colitis_Ulcerative=7		 C
rs222747 chr17 3589906 (GRCh38.p12) C>A / C>G / C>T TRPV1 Missense Variant Pain=13
Dyspepsia=9
DiabetesMellitus=7
Neuralgia=5
Asthma=4		 C
rs1979277 chr17 18328782 (GRCh38.p12) G>A SHMT1 Missense Variant BreastNeoplasms=43
Neoplasms=38
ColorectalNeoplasms=24
Drug_RelatedSideEffectsAndAdverseReactions=13
ProstaticNeoplasms=11		 C
rs5848 chr17 44352876 (GRCh38.p12) C>T GRN 3 Prime UTR Variant||FAM171A2|500B Downstream Variant AlzheimerDisease=128
FrontotemporalLobarDegeneration=109
FrontotemporalDementia=54
ParkinsonDisease=36
NeurodegenerativeDiseases=31		 C
rs1052553 chr17 45996523 (GRCh38.p12) A>G MAPT Synonymous Variant ParkinsonDisease=39
Tremor=10
MultipleSclerosis=7
RestlessLegsSyndrome=5
SupranuclearPalsy_Progressive=5		 rs1052553 A
rs763361 chr18 69864406 (GRCh38.p12) T>A / T>C / T>G CD226 Missense Variant AutoimmuneDiseases=75
Arthritis_Rheumatoid=45
LupusErythematosus_Systemic=35
DiabetesMellitus=31
MultipleSclerosis=22		 rs763361 A
rs5498 chr19 10285007 (GRCh38.p12) A>G ICAM1 Missense Variant||ICAM4|2KB Upstream Variant DiabetesMellitus=110
Neoplasms=84
CerebralInfarction=66
CoronaryArteryDisease=65
CoronaryDisease=60		 C
rs874628 chr19 18193890 (GRCh38.p13) A>G / A>T MPV17L2 Missense Variant InflammatoryBowelDiseases=2
MultipleSclerosis=2
ProstaticNeoplasms=2
Glaucoma=2
SandhoffDisease=2		 rs874628 B
rs1883832 chr20 46118343 (GRCh38.p12) T>A / T>C / T>G CD40 Non Coding Transcript Variant LupusErythematosus_Systemic=59
GravesDisease=55
Atherosclerosis=42
Arthritis_Rheumatoid=39
AcuteCoronarySyndrome=31		 rs1883832 C
rs2248137 chr20 54173204 (GRCh38.p12) C>G / C>T CYP24A1 Intron Variant Asthma=25
ThyroidNeoplasms=2
MultipleSclerosis=1
ThyroidCancer_Papillary=1
ProperdinDeficiency_X_linked=1		 rs2248137 C
rs4680 chr22 19963748 (GRCh38.p12) G>A COMT Missense Variant||MIR4761|2KB Upstream Variant Schizophrenia=1145
Pain=523
DepressiveDisorder=365
ParkinsonDisease=357
Psychoses_Substance_Induced=351		 C

Identified Disease Ontologies based on the extracted SNPs

Statistics

Identified SNPs in the three major Groups

Identified SNPs in the Category A

Identified SNPs in the Category B

Identified SNPs in the Category C

GWAS Analysis Results

Identified SNPs in Human Chromosomes

Identified SNPs, Genes and Promoters per Chromosomes

Semantic and Datamining of identified Genes


Identified GenesConnected GenesRelative Publications
TNFRSF1B TNF 11607787 ,15280569 ,16306881 ,19684152
TNFRSF1B HLA-DRB1 11607787
TNFRSF1B STAT4 19684152
TNFRSF1B TNFRSF8 16306881
TNFRSF1B TNFRSF1A 15280569
TNFRSF1B TNFRSF14 16306881
PTPN22 C2 15883854 ,19440199 ,20483040
PTPN22 C5 21968398
PTPN22 PSS 16163373 ,15933742 ,31616406
PTPN22 CRP 16519819 ,20947557
PTPN22 CR2 32607330
PTPN22 CD4 21542789 ,28237724 ,31616406
PTPN22 IL4 24699314
PTPN22 CD28 26092158
PTPN22 CD22 31616406
PTPN22 CD40 21542789 ,31616406
PTPN22 HLA-DRB1 17932559 ,20234359
PTPN22 FYN 16052172
PTPN22 LCK 16052172
PTPN22 BCR 22236425 ,29251774 ,30540579 ,31616406
PTPN22 LYN 20947557
PTPN22 MAF 16519819
PTPN22 PSC 18065500
PTPN22 CTLA4 20962850 ,19507500 ,21792837 ,24653663
PTPN22 NAT2 20035223
PTPN22 CSK 16052172 ,15734872 ,15620463 ,19299707
PTPN22 APCS 29040339
PTPN22 FCGR2A 18204446 ,21792837
PTPN22 INS 16519819 ,24699314
PTPN22 NOS3 32607330
PTPN22 IL1B 28786745
PTPN22 IL1RN 16519819
PTPN22 HLA-DRA 31032751
PTPN22 IRF5 16964481 ,17158136 ,19440199 ,21060334 ,20947557 ,20131239 ,20962850 ,20035223 ,18438842 ,19796918 ,18204446 ,21794545 ,24699314 ,26092158 ,24653663 ,31032751
PTPN22 PDCD1 16964481 ,17021721 ,16052172 ,15883854 ,19440199 ,20947557 ,21792837
PTPN22 TRIO 17158136 ,18065500
PTPN22 SRC 16052172 ,15620463 ,18056643
PTPN22 STAT1 17932559
PTPN22 STAT4 17932559 ,19440199 ,21060334 ,20947557 ,20131239 ,20035223 ,19796918 ,18204446 ,19714582 ,29783350 ,21968398 ,21792837 ,21542789 ,24653663 ,31032751 ,30920455
PTPN22 TCF7 15620463
PTPN22 SLC22A4 15883854
PTPN22 RUNX1 16519819
PTPN22 SLC9A3R1 16519819
PTPN22 SPINK5 16519819
PTPN22 SPP1 19440199
PTPN22 TNFAIP3 19440199 ,21060334 ,20947557 ,21542789 ,26092158 ,26683155 ,31032751
PTPN22 TNFSF4 19440199 ,21060334 ,20962850 ,21792837 ,24699314 ,24587899 ,31032751
PTPN22 PXK 20947557 ,18204446 ,19714582 ,21792837
PTPN22 XKR6 20947557 ,20962850
PTPN22 UBE2L3 20962850
PTPN22 TYK2 20035223 ,19714582
PTPN22 SH2B3 19956107
PTPN22 TLR7 19956107 ,29251774
PTPN22 TLR8 19956107
PTPN22 UBASH3A 19956107
PTPN22 SLC24A3 20483040
PTPN22 RHD 21384170
PTPN22 RAF1 21968398
PTPN22 TRAF1 21968398
PTPN22 RETN 24699314
PTPN22 SELE 24699314
PTPN22 TNFRSF11B 24699314
PTPN22 TNIP1 24587899 ,31032751
PTPN22 UHRF1BP1 24587899
PTPN22 REM2 26683155
PTPN22 TREM2 26683155
PTPN22 TNF 19440199 ,21060334 ,20947557 ,20962850 ,21792837 ,21542789 ,24699314 ,26092158 ,24587899 ,26683155 ,28527290 ,31032751
PTPN22 VDR 28527290
PTPN22 TLR4 29251774
PTPN22 TLR9 29251774 ,30540579 ,31616406
PTPN22 TNXB 31032751
PTPN22 TRPV4 32607330
PTPN22 PTPRC 31616406
PTPN22 PTPRO 31616406
PTPN22 SYK 31616406
PTPN22 MBL2 21792837
PTPN22 NFKB1 16519819
PTPN22 CCR7 24699314
PTPN22 IRAK1 20947557
PTPN22 CCL5 24699314
PTPN22 PADI4 17968335 ,17932559 ,15883854 ,16519819 ,20234359
PTPN22 CFH 16519819
PTPN22 ADAM33 16519819
PTPN22 FCRL3 17932559 ,16519819 ,18065500 ,20234359
PTPN22 LAG3 16519819
PTPN22 BTK 31616406
PTPN22 BANK1 19440199 ,21060334 ,20947557 ,20962850 ,19714582 ,21792837
PTPN22 BLK 19440199 ,21060334 ,20947557 ,20131239 ,26092158 ,24587899 ,31032751
PTPN22 ITGAM 19440199 ,21060334 ,20947557 ,20035223 ,18204446 ,19714582 ,21792837 ,24587899 ,31032751
PTPN22 MTOR 30920455
PTPN22 AK1 20947557
PTPN22 ATG5 20947557
PTPN22 MECP2 19714582 ,21792837
PTPN22 LY9 19714582
PTPN22 IL2RA 26092158
PTPN22 FAM167A 20131239
PTPN22 ERBB3 20962850 ,19956107
PTPN22 ICA1 20962850
PTPN22 CLEC16A 19956107
PTPN22 FHOD3 19956107
PTPN22 IL12A 24699314
PTPN22 LRP1B 20483040 ,28785369
PTPN22 CFB 21792837
PTPN22 PTPN2 16964481 ,17021721 ,16868974 ,17092257 ,16052563 ,18075792 ,17158136 ,15641066 ,15999805 ,17066073 ,15273934 ,15759012 ,16163373 ,16052172 ,15732281 ,17968335 ,17932559 ,16464986 ,17868256 ,16697661 ,16320352 ,15933742 ,17259401 ,16391555 ,16185328 ,15934099 ,17729039 ,15734872 ,16760194 ,15620463 ,15986374 ,15719322 ,15883854 ,16519819 ,18056643 ,18065500 ,16273109 ,19440199 ,21060334 ,20739780 ,20947557 ,21078766 ,19210878 ,19028372 ,20131239 ,20962850 ,20035223 ,18981062 ,19956107 ,18438842 ,20965855 ,19796918 ,20483040 ,18204446 ,19714582 ,29783350 ,19507500 ,21794545 ,20234359 ,18194365 ,21190368 ,19299707 ,21818561 ,23314521 ,23966601 ,21384170 ,21968398 ,22704547 ,23950893 ,24269925 ,21543514 ,21792837 ,21542789 ,23076337 ,24189282 ,22204900 ,21467606 ,23619366 ,22236425 ,21515266 ,25463433 ,24699314 ,26013387 ,24433447 ,26092158 ,26018863 ,26748951 ,27166176 ,24985973 ,26077719 ,24653663 ,24587899 ,25003765 ,26683155 ,25523449 ,24188455 ,28619073 ,28785369 ,28527290 ,28990435 ,29729713 ,29251774 ,30886958 ,29512901 ,28786745 ,28237724 ,29040339 ,30540579 ,31032751 ,30871426 ,32607330 ,31232672 ,31616406 ,30871019 ,30920455 ,30507064
PTPN22 MIF 21794545 ,24699314
PTPN22 KIF5A 26092158
PTPN22 IL23R 24699314
PTPN22 NLRP3 28786745
PTPN22 MSH5 21792837
PTPN22 CARD11 31032751
PTPN22 PRM1 21542789
PTPN22 ADIPOQ 24699314
PTPN22 CDKN2B 24699314
PTPN22 CSF1 24699314
PTPN22 MS4A1 24699314
PTPN22 PTGS1 24699314
PTPN22 HLA-DRB4 25523449
PTPN22 PTPN11 31616406
PTPN22 COL2A1 32607330
FCRL3 CRP 16519819
FCRL3 CFH 16519819
FCRL3 ADAM33 16519819
FCRL3 HLA-DRB1 17932559 ,20234359
FCRL3 PADI4 17932559 ,16519819 ,20234359
FCRL3 STAT1 17932559
FCRL3 STAT4 17932559
FCRL3 IL1RN 16519819
FCRL3 INS 16519819
FCRL3 LAG3 16519819
FCRL3 MAF 16519819
FCRL3 NFKB1 16519819
FCRL3 RUNX1 16519819
FCRL3 SLC9A3R1 16519819
FCRL3 SPINK5 16519819
FCRL3 PSC 18065500
FCRL3 TRIO 18065500
FCRL3 FCRL2 17200162
IL1RN C2 18069935
IL1RN CRP 16519819
IL1RN IL10 11531784
IL1RN FCGR2A 11531784
IL1RN ICAM1 11531784
IL1RN IL1A 11531784
IL1RN IL1B 11531784
IL1RN SELE 11531784
IL1RN TNF 11531784
IL1RN LTA 18069935
IL1RN PDCD1 18069935
IL1RN SLC5A11 18069935
IL1RN INS 16519819
IL1RN LAG3 16519819
IL1RN MAF 16519819
IL1RN NFKB1 16519819
IL1RN PADI4 16519819
IL1RN RUNX1 16519819
IL1RN SLC9A3R1 16519819
IL1RN SPINK5 16519819
IL1RN SIGIRR 31396542
IL1RN TLR2 31396542
IL1RN TLR3 31396542
IL1RN TLR5 31396542
IL1RN CXCL8 31396542
IL1RN CFH 16519819
IL1RN ADAM33 16519819
IL1RN IL1RAP 31396542
IL1RN IL18R1 31396542
IFIH1 CD44 28246883
IFIH1 DNASE1 30707351
IFIH1 DNASE1L3 30707351
IFIH1 ADAR 25604658
IFIH1 C1QC 30707351
IFIH1 PDCD1 17535987
IFIH1 IL10 19838195
IFIH1 IL12B 19838195
IFIH1 JAZF1 19838195
IFIH1 PRDM1 19838195 ,30672908
IFIH1 SH2B3 19838195
IFIH1 TNIP1 19838195 ,28246883
IFIH1 UHRF1BP1 19838195
IFIH1 STAT4 21705624
IFIH1 IKBKE 23535865
IFIH1 IKZF1 22046141
IFIH1 IRF8 22046141
IFIH1 NCF2 22046141
IFIH1 TYK2 22046141 ,30171347
IFIH1 TLR3 24719229
IFIH1 RNASEH2A 25604658
IFIH1 RNASEH2B 25604658
IFIH1 RNASEH2C 25604658
IFIH1 SAMHD1 25604658
IFIH1 TREX1 25604658
IFIH1 LATS2 28246883
IFIH1 MON2 28246883
IFIH1 NCOA3 28246883
IFIH1 RBFOX1 28246883
IFIH1 SNX6 28246883
IFIH1 TNFAIP6 28246883
IFIH1 TTF1 28246883
IFIH1 ISG15 29100097
IFIH1 IRF5 30672908
IFIH1 TNFAIP3 30672908
IFIH1 SMS 31366715
IFIH1 JAK1 31866997
IFIH1 AK1 31866997
IFIH1 CLEC16A 19838195 ,20694011 ,21826374
IFIH1 CFB 19838195
IFIH1 CAMK4 30672908
IFIH1 ACP5 29100097
IFIH1 CGAS 31866997
IFIH1 CHAF1B 28246883
IFIH1 DNAJB3 28246883
IFIH1 GRIN2B 28246883
GC C3 16002709 ,26608564 ,28044142 ,27059274 ,29881250
GC CTD 27214601 ,24948376
GC CRP 27491152 ,27558589
GC ALB 6204937 ,18034429 ,23914190
GC REST 3686432
GC SEA 2811870
GC MAF 9073553
GC TES 9073553
GC TG 18034429 ,22988104 ,32793728
GC SPP1 18335026
GC IGH 19828626
GC TNF 18570757 ,27600904 ,30586461
GC GRIP1 20679482
GC HLA-DQA1 23257407
GC HLA-DQA2 23257407
GC HLA-DQB1 19282307 ,23257407
GC HLA-DRB1 19282307 ,23257407
GC RB1 19282307 ,23257407
GC TH 23144494 ,28219887 ,29530952 ,31396235
GC MIF 22551315 ,26759210
GC NFIL3 23340290
GC PAX5 23818250
GC RGS13 23818250
GC TLR7 22988104 ,27600904 ,26322049 ,30286201 ,31900342 ,31594791
GC LY9 23914190
GC MET 27491152 ,24948376
GC IV 26608564 ,31396235
GC TNC 26608564
GC STAT1 27069112 ,31900342 ,32253245
GC STAT3 25902303 ,27183592
GC ICOS 25654980 ,27859053
GC VAV1 25209945
GC GFI1 27600904
GC IRF7 27600904
GC TLR4 27600904
GC GCA 7163734 ,9643316 ,11503135 ,19282307 ,19309350 ,22589256 ,22228484 ,25178778 ,27214601 ,27744394 ,25399386 ,27803140 ,27252424 ,27118334 ,27558589 ,30586461 ,31396235
GC PSS 27352977
GC TAGLN2 28910360
GC TP53 28184992
GC TRAF6 22589256 ,29754557
GC MYD88 30286201
GC TLR9 30286201
GC TNIP1 29589214
GC STAT4 29881250
GC TBK1 29559975
GC RUNX2 30775528
GC MTOR 30568034
GC PDCD1 31551030 ,31565862
GC NR3C1 30850964
GC IFNGR1 31900342
GC TYK2 30740104
GC SYK 32082297
GC HDAC6 31708928
GC HSPA13 32547538
GC IL21 31509749
GC NR2F6 31509749
GC HDAC1 32191636
GC PLK1 32793728
GC PTTG1 32793728
GC MAVS 31594791
GC S100B 31271591
GC GPI 30516351
GC HLA-G 31549885
GC INS 31549885
GC CR2 16002709
GC CAMP 19155497
GC CD4 15564715 ,22951828 ,27069113 ,24948376 ,29568300 ,28894277 ,32161059 ,32503684 ,31509749 ,30516351
GC CDR3 25951191
GC CD28 23340290
GC CD40 15564715 ,22951828 ,27069113 ,32161059
GC FAS 19828626 ,19922498 ,28408984
GC ACR 31549885
GC BCR 19828626 ,26305967 ,25801429 ,29774664 ,30286201 ,29996101 ,31562657 ,32161059
GC FCGR2B 23109709
GC FH 19221396 ,21948081 ,22390182 ,28894277 ,32161059 ,32503684
GC CCR6 28444576 ,28910360
GC CXCR4 17578864
GC CXCR5 17578864 ,26990531
GC CXCL13 26990531
GC CD84 25801429
GC BCL6 19221396 ,26887860 ,32191636
GC EZH2 32503684 ,32191636
GC CCL20 28444576
GC BACH2 23818250
GC FOSB 23818250
GC CD180 26277892
GC C5AR1 30568034
GC FKBP5 32557257
GC ABI2 28910360
GC CCNB1 32793728
GC FKBP4 32557257
IL7R C5 31082500
IL7R FCGR2A 31082500
IL7R IL1B 31082500
IL7R CXCL8 31082500
IL7R IL2RA 31082500
IL7R IRF5 31082500
IL7R JUN 31082500
IL7R LYN 31082500
IL7R MMP9 31082500
IL7R NFKBIA 31082500
IL7R STAT4 31082500
IL7R TNF 31082500
IL7R TSLP 31082500
ERAP1 KIF5A 19110536
ERAP1 PIP4K2C 19110536
ERAP1 TNFAIP3 19110536
ERAP1 HCP5 25369137
ERAP1 IL10 25369137
ERAP1 IL23R 25369137
ERAP1 IRAK1 25369137
ERAP1 MIR146A 25369137
ERAP1 PSORS1C1 25369137
ERAP1 PTPN2 25369137
ERAP1 STAT4 25369137
ERAP1 ATG7 24582332
ERAP1 ATG16L1 25369137
MOG C3 32401602
MOG GFAP 31773416
MOG CYBB 32401602
MOG APCS 32401602
MOG LAP 32401602
MOG ATG5 32401602
MOG ITGAX 32401602
MOG AQP4 22204662 ,28326889 ,30265368
MOG CSF2 32401602
MOG TG 32401602
MOG LGI1 30265368
NOS3 CR2 32607330
NOS3 NOS2 15579024 ,22560558
NOS3 NOS1 11071967
NOS3 TRPV4 32607330
NOS3 COL2A1 32607330
PRF1 CD5 22184503
PRF1 CD40 23340289 ,23029299 ,22184503
PRF1 DNMT1 23029299 ,22184503
PRF1 DNMT3A 23029299 ,27737517
PRF1 CD163 30774631
PRF1 FOXP3 25986394
PRF1 DNMT3B 23029299 ,27737517
PRF1 MBD2 23029299 ,27737517
PRF1 MBD4 23029299
PRF1 CD70 23340289 ,23029299 ,22184503 ,25986394
PRF1 CXCR4 25986394
PRF1 CX3CR1 26352601
PRF1 FLI1 25986394
PRF1 KIR2DL4 22305513 ,23029299 ,22184503
PRF1 ITGAL 23340289 ,23029299 ,22184503 ,25986394 ,27737517
PRF1 RFX1 23340289
PRF1 THY1 25986394
PRF1 PRKCH 26352601
PRF1 TIA1 26352601
PRF1 TLR5 26352601
PRF1 TNFSF10 26352601
PRF1 TXN 26352601
PRF1 CD40LG 23029299 ,22184503
PRF1 CDKN2A 25986394
PRF1 LY96 26352601
PRF1 DUSP23 27737517
PRF1 FHL2 26184781
FAS C2 9328788
FAS C3 11642515 ,11801636 ,26076826 ,29264699
FAS ELL 9776707
FAS CR1 12133988
FAS ALB 8706339 ,7694292 ,9862736 ,8807576 ,9506879 ,10359584 ,9974430 ,10490951 ,11490027 ,17039669 ,14989372 ,23918976 ,24343821 ,24667130 ,28216896
FAS CR2 12133988
FAS CAMP 19276072
FAS CD4 9309192 ,8225181 ,9159145 ,10359584 ,10433086 ,12163557 ,11012628 ,11490027 ,12855571 ,16226734 ,17516614 ,17339497 ,17162369 ,21882343
FAS CDR3 7621595
FAS CD28 9041943 ,9058837 ,9061668 ,9372049 ,8910687 ,10370375
FAS APC 8380429 ,18275831 ,23918976
FAS CD40 9309192 ,12855571
FAS CD80 9309192 ,10370375
FAS NGF 9168160
FAS TNF 9822266 ,9182924 ,19836636 ,19794494 ,21793106 ,22163040 ,21742731 ,29407876 ,29021794 ,31072029
FAS IGH 8566031 ,11490027 ,19828626
FAS MAX 9041943
FAS THY1 9159145 ,9130234
FAS MIA 7529480 ,10482996
FAS PSS 10632670
FAS STAT1 12064832 ,16163374 ,15684739
FAS REST 11642515
FAS REL 11782530 ,26084385
FAS FYN 16365433
FAS STAT4 16920939
FAS STAT6 16920939
FAS TH 9159145 ,9130234 ,17339497 ,19946036 ,28584258
FAS IRAK1 18050247
FAS IRF5 18050247 ,21742731
FAS SELP 18050247
FAS SSB 20064083
FAS INS 20360925
FAS KIT 19181929 ,23846229 ,23671449
FAS TAM 19794494
FAS FASLG 20394629 ,22163040 ,22474574 ,27848183 ,27812953
FAS PDCD4 21882343
FAS FOXO3 22375903
FAS IRF1 21742731
FAS IRF3 21742731
FAS IRF4 21742731
FAS IRF7 21742731
FAS MYD88 21808234
FAS TLR7 21808234 ,30108025
FAS LOX 22143975 ,32265934
FAS PCNA 23671449
FAS IGFBP2 27211902
FAS MMP10 27211902
FAS SIGLEC5 27211902
FAS HMGB1 25762779
FAS TG 24667130 ,28216896
FAS MSC 26365178
FAS NMT1 26365178
FAS NOTCH1 26365178
FAS TLR9 28278279
FAS RB1 29434811
FAS IV 29468159
FAS HOXC4 32265934
FAS CD86 18325838
FAS BAX 9822266 ,9041943 ,11359381 ,12846046 ,11905854 ,11397650 ,22375903 ,27909160
FAS CD44 8225181
FAS BCR 19828626 ,22647731
FAS CD19 17516614 ,17162369
FAS CD68 9175910
FAS CTLA4 9372049 ,8910687 ,10370375 ,22474574
FAS BAD 22647731
FAS FAF1 8524870
FAS CD14 23846229
FAS APCS 18275831 ,23918976
FAS CCL2 17625118
FAS DNMT1 26365178
FAS CXCR4 25941813
FAS CXCL13 32642338
FAS CA12 16412052
FAS AXL 27211902
FAS CAT 28584258
FAS ESR1 32265934
FAS APOE 18325838
FAS BID 22647731
FAS EGFR 27211902
FAS CSF3R 31001259
FAS ACSL4 22163040
FAS ACSL5 22163040
FAS AICDA 32265934
FAS CASP10 27848183
FAS CDKN2C 31001259
FAS ASL 20394629 ,22163040 ,22474574 ,27848183 ,27812953 ,32546562 ,31072029
GSTP1 ACR 15934438
GSTP1 GSTM1 12563680 ,15934438 ,16995867 ,24981927 ,26258094 ,27002825 ,28976264
GSTP1 GSTT1 12563680 ,15934438 ,17195228 ,16995867 ,24981927 ,26258094 ,27002825 ,28976264
GSTP1 MAX 28976264
GSTP1 CYP2C19 27002825 ,28976264 ,32496149
GSTP1 CYP3A4 28976264 ,32496149
GSTP1 CYP2B6 27002825
GSTP1 CYP2C9 28976264
GSTP1 GSTA1 32496149
VDR C3 31104216
VDR PSS 24803230
VDR IL2 23190644
VDR CAMP 26304030
VDR TNF 28527290
VDR IL6 23190644
VDR STAT3 20976278
VDR IFNG 23190644
VDR CD70 27915349
VDR FOXO3 20976278
VDR HSPB1 20976278
VDR ITGB2 20976278
VDR APOE 22801788
VDR BCL3 23190644
VDR SMS 24803230
VDR SKP2 31823770
NOD2 IV 31186034
NOD2 CTLA4 19567624
NOD2 IL10 21300624 ,25652333
NOD2 JAK2 21300624
NOD2 FCGR2A 19567624
NOD2 IRF5 19567624 ,22412986
NOD2 IL12B 21300624
NOD2 DLG5 16642031
NOD2 IBD5 16642031
NOD2 PDCD1 19567624
NOD2 TYK2 19567624 ,21300624 ,25652333
NOD2 ORMDL3 21300624
NOD2 PRDM1 21300624
NOD2 REL 21300624
NOD2 SMAD3 21300624
NOD2 TRAF6 22412986
NOD2 PTPN2 25652333
NOD2 TNFSF4 25652333
NOD2 UNC13D 32222431
NOD2 NFKBIA 32222431
NOD2 NLRP3 31186034
NOD2 IL1R2 21300624
NOD2 IRGM 21300624
NOD2 ATG16L1 21300624
NOD2 CARD9 21300624
NOD2 CDH1 21300624
NOD2 ICOSLG 21300624
NOD2 LAMB1 21300624
NOD2 NOD1 23352252
NOD2 CSF2 25652333
NOD2 CSF1 25652333
NOD2 NLRC5 31186034
NOD2 DNASE2 32222431
TRPV1 TRPV2 22189789
TRPV1 TRPV3 22189789
TRPV1 TRPV4 22189789
GRN C3 23140401
GRN TLR9 23140401
MAPT IRF5 22685416
MAPT F5 22685416
MAPT MMRN1 22685416
MAPT OPTN 22685416
MAPT PTN 22685416
MAPT RPS26 22685416
MAPT SLCO1A2 22685416
CD226 KIF5A 20508602
CD226 SH2B3 20508602
CD226 IL2 21765104
CD226 IL21 21765104
CD226 MMEL1 21765104
CD226 NES 21765104
CD226 DEF6 26808113
CD226 IL12B 26808113
CD226 RASGRP1 26808113
CD226 SIGLEC6 26808113
CD226 SYNGR1 26808113
CD226 TCF7 26808113
CD226 TERT 26808113
CD226 CD40 27722794
CD226 CDKN1A 26609326
CD226 IL32 26609326
CD226 PTPRN2 26609326
CD226 CSNK2A2 29625966
CD226 MFHAS1 29625966
ICAM1 FCGR2A 11531784
ICAM1 IL10 11531784 ,23054011
ICAM1 IL1A 11531784
ICAM1 IL1B 11531784
ICAM1 SELE 11531784
ICAM1 TNF 11531784
ICAM1 IL17RE 23054011
ICAM1 IL23R 23054011
ICAM1 IL5 23054011
ICAM1 ISG20 23054011
ICAM1 JAK2 23054011
ICAM1 S1PR1 23054011
ICAM1 ITGAM 22523428
ICAM1 VCAM1 29777158 ,31321566
ICAM1 MCM3 31321566
ICAM1 SH3BP5 31321566
ICAM1 STAT1 31321566
ICAM1 TK1 31321566
ICAM1 TXNIP 31321566
ICAM1 YWHAZ 31321566
ICAM1 CD83 31321566
ICAM1 CCL19 29777158
ICAM1 CXCL13 29777158
ICAM1 FN1 31321566
ICAM1 HSPA1A 31321566
ICAM1 CD40LG 23054011
ICAM1 F11R 31321566
ICAM1 CABLES1 31321566
ICAM1 GATA6 31321566
ICAM1 GRK5 31321566
CD40 C2 32576231 ,29763203
CD40 C3 18706081 ,23799000 ,29763203
CD40 C5 11772239 ,27713252 ,20049410 ,29763203
CD40 C4A 32576231
CD40 C1R 32576231
CD40 C1S 32576231
CD40 ALB 9550377 ,12969144 ,16507174 ,16849443 ,16008514 ,25886192
CD40 CD4 9309192 ,8683147 ,9802931 ,9884095 ,9696135 ,9617563 ,9708833 ,8621796 ,9498753 ,9884096 ,9008608 ,9884104 ,9550377 ,9036998 ,9671306 ,8892665 ,11123036 ,12139375 ,11987985 ,11086109 ,11226290 ,10510335 ,10342716 ,11438470 ,11086108 ,11772239 ,12727626 ,10933611 ,11737595 ,11764210 ,11751941 ,12390309 ,11243513 ,12730502 ,12584053 ,11721699 ,11905840 ,12855571 ,12969144 ,16507174 ,18061155 ,17884785 ,16483919 ,15989801 ,15230296 ,16640741 ,17432112 ,16849443 ,16670339 ,17530637 ,17947713 ,17579090 ,15657613 ,15583738 ,15742155 ,14994397 ,15564715 ,15701725 ,15951839 ,15621569 ,16008514 ,15693003 ,15494542 ,15613107 ,14979930 ,15599672 ,16971957 ,15491417 ,21159836 ,19812195 ,18706081 ,20478074 ,20067533 ,20811042 ,18684674 ,19854711 ,20810985 ,19520616 ,18180380 ,19758160 ,20112371 ,20855873 ,27713252 ,20049410 ,18285351 ,19644874 ,19549767 ,20130210 ,22110533 ,22113625 ,23340289 ,22385876 ,22142890 ,23054011 ,22580585 ,23933625 ,21415255 ,22952582 ,21262968 ,21914625 ,22343096 ,23029299 ,22147767 ,23680362 ,23576011 ,23434382 ,22577035 ,23256180 ,21542789 ,22870484 ,22184503 ,23799000 ,24036458 ,22951828 ,21255096 ,22860133 ,21538324 ,21429584 ,23181381 ,24374810 ,22936933 ,21799861 ,27816669 ,24480124 ,26209442 ,26867643 ,26289938 ,27001848 ,25201689 ,27102765 ,26474561 ,27069113 ,27752154 ,26968426 ,27722794 ,27509492 ,26335795 ,25886192 ,27585815 ,26432891 ,27665947 ,25381385 ,25789080 ,24482685 ,26140268 ,25309746 ,27852746 ,25640675 ,28421990 ,29175653 ,30374748 ,29330524 ,30113724 ,29127458 ,29040209 ,29214033 ,31165780 ,30774014 ,32249615 ,31642196 ,31217170 ,31109957 ,32942031 ,32675278 ,32890026 ,31616406 ,32161059 ,32576231 ,29763203 ,31831255
CD40 CD2 8892665 ,11086109 ,11086108 ,17432112 ,15494542 ,27713252 ,23680362 ,21255096 ,21799861 ,27722794 ,32675278 ,31616406 ,32576231
CD40 CD28 8892665 ,11086108 ,15494542 ,23680362 ,32576231
CD40 CD22 11086109 ,17432112 ,27713252 ,21799861 ,27722794 ,32675278 ,31616406
CD40 APC 11123036 ,11086108 ,12727626 ,15951839 ,15494542 ,20130210 ,24374810 ,31109957
CD40 CD80 9309192 ,11123036 ,11751941 ,16507174 ,15989801 ,15951839 ,21159836 ,18706081 ,20067533 ,21415255 ,23680362 ,24036458 ,21429584 ,26867643 ,25789080 ,26140268 ,32576231
CD40 CD69 9696135 ,12139375 ,15693003
CD40 IV 9008608 ,12730502 ,29127458 ,29040209
CD40 CD86 11123036 ,11751941 ,16507174 ,17530637 ,17579090 ,19812195 ,18706081 ,20478074 ,20067533 ,18684674 ,19854711 ,20810985 ,19644874 ,22147767 ,23680362 ,22577035 ,24036458 ,21429584 ,26867643 ,27509492 ,27585815 ,25381385 ,25789080 ,24482685 ,32576231
CD40 POLE 11086109
CD40 TH 11086108 ,12727626 ,15491417
CD40 CD68 12730502 ,17579090
CD40 TES 12584053
CD40 PRL 11721699
CD40 SF 11905840 ,20478074 ,29214033
CD40 MR1 12969144
CD40 TAM 18061155
CD40 CD83 15989801 ,17579090 ,18706081 ,21429584
CD40 CXCL8 17579090
CD40 TNF 15657613 ,15701725 ,20112371 ,27713252 ,20049410 ,22385876 ,23933625 ,22343096 ,21542789 ,22870484 ,24480124 ,25640675 ,29330524 ,29214033 ,31217170 ,32576231
CD40 CD5 15701725 ,22184503
CD40 ELL 16008514
CD40 CD44 15494542
CD40 JUN 14979930
CD40 CRP 15599672
CD40 VWF 15599672
CD40 CXCR3 15491417 ,23434382 ,27001848
CD40 MPO 15491417
CD40 ICOS 21159836 ,23680362 ,22870484
CD40 PDC 19812195 ,20478074 ,18684674 ,27509492
CD40 TLR9 19812195 ,18684674 ,19758160 ,27509492 ,25309746 ,31616406
CD40 FLT3 20478074
CD40 TLR7 18684674 ,20112371 ,27509492 ,25309746
CD40 MYD88 20112371
CD40 SIGIRR 20112371
CD40 CDK6 20049410
CD40 IL21 20049410
CD40 IL2RB 20049410
CD40 IRF5 20049410 ,29214033
CD40 KIF5A 20049410
CD40 KLF12 20049410
CD40 MMEL1 20049410
CD40 PRKCQ 20049410
CD40 RAF1 20049410 ,21262968
CD40 STAT4 20049410 ,21542789
CD40 TNFAIP3 20049410 ,21542789 ,31217170
CD40 TRAF1 20049410 ,21262968
CD40 SERPINB2 20130210
CD40 CD70 23340289 ,22142890 ,23029299 ,22184503
CD40 ITGAL 23340289 ,22142890 ,23029299 ,22184503
CD40 RFX1 23340289
CD40 SRY 22580585
CD40 GAPDH 21415255
CD40 TRAF6 21262968 ,22860133
CD40 PRM1 21542789
CD40 CTLA4 23799000
CD40 TLR4 24036458 ,25309746
CD40 CD84 21255096
CD40 IDE 21255096 ,29175653
CD40 TRAF3 22860133
CD40 MCM6 21538324
CD40 HOXC4 23181381
CD40 STAT3 24374810 ,26968426
CD40 TG 23340289 ,22142890 ,23029299 ,22184503 ,21799861
CD40 FOXO1 27816669
CD40 TIGIT 26867643
CD40 STAT1 26968426
CD40 CD63 27665947
CD40 CXCR4 27665947
CD40 EBF1 25789080
CD40 NM 23029299 ,22184503 ,24482685
CD40 TLR3 25309746
CD40 UBE2L3 25640675
CD40 TNFSF4 29214033
CD40 XBP1 32249615
CD40 EGFR 31642196
CD40 CR2 31217170
CD40 IL10 23054011 ,31217170 ,32576231
CD40 STS 32675278
CD40 SYK 32675278 ,31616406
CD40 MET 32890026
CD40 PSS 31616406
CD40 PTPN11 31616406
CD40 PTPN2 21542789 ,31616406
CD40 PTPRC 31616406
CD40 PTPRO 31616406
CD40 FH 32161059
CD40 CD40LG 17947713 ,19520616 ,22142890 ,23054011 ,23029299 ,23576011 ,23434382 ,22184503 ,27001848 ,29040209 ,32576231
CD40 ELANE 32576231
CD40 H2AX 32576231
CD40 MACROH2A2 32576231
CD40 PIK3CB 32576231
CD40 TRIM21 32576231
CD40 RAG1 29763203
CD40 RAG2 29763203
CD40 CAD 15599672
CD40 BCR 15742155 ,15701725 ,23181381 ,27816669 ,32675278 ,31616406 ,32161059 ,32576231
CD40 CD19 11086109 ,32890026
CD40 CD36 21415255 ,21255096
CD40 CD14 17579090 ,19854711 ,20855873
CD40 CCR5 19854711
CD40 APCS 11123036 ,15951839 ,20130210 ,31109957
CD40 CCL2 17579090 ,20049410
CD40 CCL22 17579090
CD40 C1QA 32576231
CD40 CBL 11086108 ,23434382
CD40 CD1A 15989801 ,17579090
CD40 CCR7 20478074 ,18684674 ,19854711 ,21429584
CD40 CCL19 19854711
CD40 CCL21 20049410
CD40 BTK 32890026 ,31616406
CD40 BANK1 27816669
CD40 BCL6 27665947
CD40 CD33 21255096
CD40 CD37 21255096
CD40 AICDA 23181381
COMT CAD 25648260
COMT CYP1A1 24772967 ,26689915
COMT GSTM1 24772967
COMT GSTT1 24772967
COMT MTHFR 25648260
COMT MTRR 25648260 ,26689915
COMT RFC1 25648260
COMT TYMS 25648260 ,26689915
COMT ESR1 26689915
COMT SLC19A1 26689915
COMT SSB 26689915
COMT STAT4 26689915
COMT TLR5 26689915


Extracted Genes from Data mining analysis in Graph

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SNPs analysis results for SLE      

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Data mining analysis results for SLE     

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Publications that has been used in Data mining analysis

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Current SLE related Genes in Graph

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Current SLE related SNPs in Chromosomes

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SLE accosiated Genes in Graph         

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SLE accosiated SNPs in Chromosomes

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